Basic Information
Locus ID:
Sp5g24390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 1229922 | 1231742 | - | Sp5g24390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 29,919.18 Da | 46.92 | 101.81 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 45 | 84 | 4.4E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 38 | 101 | 3.53E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 135 | 2.0E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 100 | 10.069786 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 64 | 73 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006302697.1 | E3 ubiquitin-protein ligase RNF182 [Capsella rubella] | 0 |
| TrEMBL | A0A8T2BU22 | RING-type zinc-finger LisH dimerization motif OS=Arabidopsis suecica OX=45249 GN=ISN44_As07g017660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology