Basic Information
Locus ID:
Sp5g23960.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 1034026 | 1035562 | + | Sp5g23960.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 53,529.67 Da | 36.25 | 90.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 15 | 128 | 1.4E-17 | IPR025558 |
| Pfam | PF13639 | Ring finger domain | 412 | 453 | 5.7E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 412 | 460 | 3.53E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 407 | 462 | 2.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 413 | 453 | 7.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 413 | 453 | 11.899158 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68845.1 | 0 | |
| RefSeq | XP_048592003.1 | uncharacterized protein LOC125576300 [Brassica napus] | 0 |
| TrEMBL | A0A8D9MA83 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A07P37650.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68845.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019819m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g23960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g046210.2N |