Basic Information
Locus ID:
Sp5g23070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 570946 | 572820 | - | Sp5g23070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 39,093.62 Da | 58.98 | 93.88 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 302 | 345 | 5.02013E-18 | - |
| Pfam | PF13639 | Ring finger domain | 301 | 343 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 347 | 8.33E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 351 | 4.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 342 | 5.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 343 | 13.079398 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 347 | 353 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_006391188.2 | E3 ubiquitin protein ligase RIE1 [Eutrema salsugineum] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | V4KBJ8 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10018815mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology