Basic Information
Locus ID:
Sp5g22970.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Protein POLLEN DEFECTIVE IN GUIDANCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 538423 | 540122 | + | Sp5g22970.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 31,082.44 Da | 34.55 | 77.49 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 35 | 98 | 9.4E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 24 | 107 | 2.15E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 11 | 108 | 3.5E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 32 | 101 | 7.1E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 31 | 105 | 10.888906 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67950.3 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_048617078.1 | binding partner of ACD11 1 isoform X1 [Brassica napus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9Q7B8 | RRM domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00050992 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology