Basic Information
Locus ID:
Sp5g22490.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 324696 | 325793 | + | Sp5g22490.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 41,305.63 Da | 52.94 | 87.51 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 63 | 7.4E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 112 | 155 | 1.0E-5 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 70 | 348 | 5.1E-31 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 62 | 7.98E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 39 | 295 | 2.3E-19 | IPR015915 |
| SMART | SM00256 | fbox_2 | 23 | 63 | 2.5E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 122 | 168 | 0.0014 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 63 | 10.133335 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006410042.2 | F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | V4LLV6 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017704mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |