Basic Information
Locus ID:
Sp5g22290.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-6 | 239714 | 241037 | + | Sp5g22290.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 40,817.16 Da | 49.66 | 81.95 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 310 | 349 | 1.8E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 104 | 4.36E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 103 | 227 | 1.44E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 314 | 352 | 1.19E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 296 | 355 | 9.0E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 80 | 256 | 3.5E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 307 | 349 | 10.816236 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 380 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_006391290.2 | F-box protein At1g67340 [Eutrema salsugineum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565B0G2 | MYND-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS4814 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology