Basic Information
Locus ID:
Sp5g21210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-5 | 970459 | 973489 | + | Sp5g21210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 102,759.73 Da | 40.37 | 94.78 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 596 | 870 | 4.65331E-94 | - |
| Pfam | PF13855 | Leucine rich repeat | 91 | 148 | 2.9E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 328 | 362 | 3.9E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 413 | 430 | 0.99 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 62 | 6.7E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 591 | 865 | 7.8E-46 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 302 | 5.78E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 568 | 875 | 6.12E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 330 | 433 | 4.42E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 554 | 667 | 4.3E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 323 | 7.7E-88 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 668 | 885 | 4.9E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 325 | 449 | 2.1E-35 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 112 | 135 | 7.3E-5 | IPR003591 |
| SMART | SM00220 | serkin_6 | 590 | 871 | 1.0E-45 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 411 | 433 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 233 | 255 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 136 | 160 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 89 | 111 | 380.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 590 | 871 | 39.636696 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 114 | 135 | 7.080498 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 715 | 727 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 596 | 628 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 466 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | NP_176789.1 | transmembrane kinase 1 [Arabidopsis thaliana] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565AXP8 | Protein kinase domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS4661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology