Basic Information
Locus ID:
Sp5g20190.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-5 | 260303 | 265639 | - | Sp5g20190.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 64,660.53 Da | 50.45 | 62.40 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 127 | 177 | 3.0375E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 258 | 3.8E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 275 | 323 | 1.6E-8 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 539 | 566 | 1.69E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 325 | 3.24E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 265 | 1.62E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 205 | 9.18E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 254 | 509 | 2.5E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 209 | 6.7E-17 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 532 | 566 | 3.5E-6 | - |
| SMART | SM00547 | zf_4 | 541 | 565 | 4.0E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 196 | 258 | 1.2E-22 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 271 | 332 | 0.14 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 171 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 539 | 566 | 8.580583 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 123 | 336 | 49.905312 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 543 | 562 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_013615163.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Brassica oleracea var. oleracea] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VKI1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology