Basic Information
Locus ID:
Sp5g16570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 6686612 | 6687616 | + | Sp5g16570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 37,109.64 Da | 33.70 | 89.01 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06606 | STKc_MAPKKK | 44 | 317 | 6.31468E-109 | - |
| Pfam | PF00069 | Protein kinase domain | 48 | 317 | 8.2E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 41 | 319 | 5.47E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 41 | 329 | 6.8E-62 | - |
| SMART | SM00220 | serkin_6 | 45 | 318 | 4.5E-62 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 45 | 318 | 39.749767 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 51 | 75 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46140.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024009394.1 | LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 18 [Eutrema salsugineum] | 0 |
| Q9ZVP5 | Mitogen-activated protein kinase kinase kinase 18 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK18 PE=1 SV=1 | 0 | |
| TrEMBL | V4KHW0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002972mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT2G18530.1, AT3G45670.1, AT3G45790.1, AT3G46140.1 ... |
| Brassicaceae | Eutrema salsugineum | 12 | Thhalv10002766m.g.v1.0, Thhalv10002826m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp5g15460.v2.2, Sp5g15480.v2.2, Sp5g15720.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB08g058970.2N, BniB08g059000.2N, BniB08g062340.2N ... |