Basic Information
Locus ID:
Sp5g16560.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 6680281 | 6683318 | + | Sp5g16560.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 48,732.47 Da | 37.57 | 79.39 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 313 | 2.4E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 370 | 5.76E-122 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 382 | 2.3E-140 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 425 | 2.5E-213 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 111 | 131 | 2.6E-56 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 133 | 156 | 8.4E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 251 | 261 | 8.4E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 168 | 2.6E-56 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 180 | 8.4E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 59 | 77 | 2.6E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 229 | 247 | 2.6E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 2.6E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 90 | 107 | 2.6E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 212 | 225 | 2.6E-56 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 426 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_006279377.1 | histone deacetylase 9 [Capsella rubella] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | R0GJ07 | Histone deacetylase OS=Capsella rubella OX=81985 GN=CARUB_v10007995mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology