Basic Information
Locus ID:
Sp5g15730.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 6150783 | 6151778 | + | Sp5g15730.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 37,493.05 Da | 53.28 | 78.67 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 64 | 324 | 2.7E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 324 | 6.29E-59 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 42 | 134 | 1.3E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 135 | 325 | 5.3E-42 | - |
| SMART | SM00220 | serkin_6 | 61 | 330 | 1.3E-44 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 61 | 331 | 36.272804 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 67 | 96 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 189 | 201 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46160.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013669080.1 | mitogen-activated protein kinase kinase kinase 20 [Brassica napus] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6F0G6 | Protein kinase domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC1T03296H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT2G18530.1, AT3G45670.1, AT3G45790.1, AT3G46140.1 ... |
| Brassicaceae | Eutrema salsugineum | 12 | Thhalv10002766m.g.v1.0, Thhalv10002826m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp5g15460.v2.2, Sp5g15480.v2.2, Sp5g15720.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB08g058970.2N, BniB08g059000.2N, BniB08g062340.2N ... |