Basic Information
Locus ID:
Sp5g15470.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 6048305 | 6049791 | + | Sp5g15470.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 44,453.77 Da | 36.55 | 74.95 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 229 | 1.09E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 136 | 6.42E-9 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 149 | 386 | 2.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 136 | 5.2E-9 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 124 | 227 | 0.0081 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 41 | 231 | 18.610071 | IPR044066 |
| Coils | Coil | Coil | 327 | 347 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_013627504.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI16 [Brassica oleracea var. oleracea] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6BLS5 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T19275H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |