Basic Information
Locus ID:
Sp5g15350.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Histone H2A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 5981573 | 5983514 | + | Sp5g15350.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 30,886.30 Da | 33.56 | 107.70 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 63 | 121 | 3.0E-5 | IPR001245 |
| Pfam | PF15511 | Centromere kinetochore component CENP-T histone fold | 229 | 267 | 1.0E-6 | IPR035425 |
| SUPERFAMILY | SSF47113 | Histone-fold | 216 | 273 | 6.29E-15 | IPR009072 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 44 | 144 | 9.56E-13 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 66 | 131 | 3.5E-15 | - |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 215 | 274 | 4.4E-30 | IPR009072 |
| SMART | SM00417 | h44 | 201 | 261 | 1.2E-20 | IPR001951 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 60 | 274 | 9.559545 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 66 | 88 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46330.2 | - | 0 |
| RefSeq | NP_001326106.1 | Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 0 |
| C0LGP2 | Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana OX=3702 GN=MEE39 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3CSL1 | Putative LRR receptor-like serine/threonine-protein kinase MEE39 OS=Noccaea caerulescens OX=107243 GN=GA_TR15951_c0_g1_i1_g.50524 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Sp5g15350.v2.2.