Basic Information
Locus ID:
Sp5g15170.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 5875550 | 5878327 | + | Sp5g15170.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 71,707.73 Da | 33.46 | 95.83 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 7.41322E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 548 | 587 | 3.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 466 | 504 | 3.3E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 383 | 422 | 1.7E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 326 | 3.4E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 333 | 2.35E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 635 | 1.57E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 507 | 658 | 5.2E-21 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 117 | 1.2E-10 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 329 | 3.7E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 336 | 492 | 8.4E-37 | IPR011989 |
| SMART | SM00185 | arm_5 | 465 | 505 | 0.59 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 3.6E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 383 | 423 | 3.0E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 589 | 629 | 96.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 424 | 464 | 0.064 | IPR000225 |
| SMART | SM00185 | arm_5 | 506 | 546 | 9.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 547 | 587 | 17.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 517 | 559 | 9.1524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 45.132526 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 394 | 436 | 13.4574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 661 | - | - |
| Coils | Coil | Coil | 620 | 644 | - | - |
| Coils | Coil | Coil | 94 | 114 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_006418891.1 | U-box domain-containing protein 13 [Eutrema salsugineum] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | V4L4V7 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002430mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology