Basic Information
Locus ID:
Sp5g15060.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 5822703 | 5823866 | + | Sp5g15060.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 42,308.02 Da | 68.46 | 64.44 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 204 | 248 | 6.65764E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 20 | 57 | 2.5E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 203 | 245 | 5.3E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 263 | 385 | 6.8E-38 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 251 | 1.57E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 251 | 2.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 204 | 244 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 204 | 245 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006418878.1 | E3 ubiquitin-protein ligase RDUF1 [Eutrema salsugineum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3ENF3 | RING-type E3 ubiquitin transferase OS=Noccaea caerulescens OX=107243 GN=LC_TR2381_c0_g1_i1_g.7600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology