Basic Information
Locus ID:
Sp5g14790.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 5726853 | 5728199 | - | Sp5g14790.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 50,870.79 Da | 46.71 | 96.94 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 86 | 424 | 1.2E-119 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 214 | 434 | 3.2E-47 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 54 | 205 | 1.8E-16 | IPR038538 |
| SMART | SM00733 | mt_12 | 269 | 299 | 1.2E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 339 | 370 | 7.1E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 136 | 167 | 230.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 371 | 405 | 3.8 | IPR003690 |
| SMART | SM00733 | mt_12 | 304 | 334 | 2.6 | IPR003690 |
| SMART | SM00733 | mt_12 | 100 | 131 | 0.0015 | IPR003690 |
| SMART | SM00733 | mt_12 | 234 | 264 | 0.19 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46950.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013647831.2 | transcription termination factor MTERF15, mitochondrial-like [Brassica napus] | 0 |
| TrEMBL | A0A816IL45 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P71120.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |