halophFGD

Basic Information

Locus ID: Sp5g14530.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: 40s ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch5-1	5611731	5612748	+	Sp5g14530.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.65	13,060.17 Da	36.44	95.64	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00338	Ribosomal protein S10p/S20e	19	113	2.3E-28	IPR027486
SUPERFAMILY	SSF54999	Ribosomal protein S10	17	114	1.83E-30	IPR036838
Gene3D	G3DSA:3.30.70.600	Ribosomal protein S10 domain	4	116	4.3E-48	IPR036838
SMART	SM01403	Ribosomal_S10_2	19	113	8.2E-38	IPR027486
TIGRFAM	TIGR01046	uS10_euk_arch: ribosomal protein uS10	16	114	2.3E-40	IPR005729
PRINTS	PR00971	Ribosomal protein S10 family signature	74	88	6.2E-14	IPR001848
PRINTS	PR00971	Ribosomal protein S10 family signature	52	67	6.2E-14	IPR001848
PRINTS	PR00971	Ribosomal protein S10 family signature	17	30	6.2E-14	IPR001848
Hamap	MF_00508	30S ribosomal protein S10 [rpsJ].	15	114	18.389648	IPR001848

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome) GO:0015935 (small ribosomal subunit)

KEGG Pathway

KO Term:

K02969 (small subunit ribosomal protein S20e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G45030.1	Ribosomal protein S10p/S20e family protein.
RefSeq	XP_006281256.2	40S ribosomal protein S20-1 [Capsella rubella]
Swiss-Prot	P49200	Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2
TrEMBL	A0A1J3IDF1	40S ribosomal protein S20-1 OS=Noccaea caerulescens OX=107243 GN=GA_TR2619_c0_g1_i1_g.8440 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14085, jg16534, jg34021
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16050, gene_3133
Amaranthaceae	Atriplex hortensis	1	Ah019074
Amaranthaceae	Beta vulgaris	1	BVRB_3g055730
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14020, Sbi_jg15373, Sbi_jg51937, Sbi_jg56192
Amaranthaceae	Salicornia europaea	2	Seu_jg26660, Seu_jg9929
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006995, GOSA_00020272
Amaranthaceae	Suaeda glauca	4	Sgl02150, Sgl07309, Sgl22952, Sgl28074
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005186, gene:ENSEOMG00000031212 ... gene:ENSEOMG00000043434
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0001480, CQ.Regalona.r1.3BG0001560
Anacardiaceae	Pistacia vera	1	pistato.v30181330
Apiaceae	Apium graveolens	4	Ag10G02663, Ag10G02664, Ag7G02503, Ag7G02507
Arecaceae	Cocos nucifera	3	COCNU_09G002160, scaffold014082G000020 ... scaffold019114G000040
Arecaceae	Phoenix dactylifera	6	gene-LOC103697438, gene-LOC103710562, gene-LOC103717396 ... gene-LOC103723774, gene-LOC120107683, gene-LOC120108538
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1308.V1.1, AsparagusV1_04.1165.V1.1 ... AsparagusV1_10.122.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G04238, Ftri11G17853, Ftri12G18947, Ftri15G20647 ... Ftri3G08259
Brassicaceae	Arabidopsis thaliana	3	AT3G45030.1, AT3G47370.2, AT5G62300.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005136m.g.v1.0, Thhalv10010823m.g.v1.0 ... Thhalv10015032m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g25580.v2.2, Sp5g14530.v2.2, Sp6g13770.v2.2
Brassicaceae	Brassica nigra	3	BniB06g010670.2N, BniB07g041540.2N, BniB08g017740.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2009, Ceq02G2010
Casuarinaceae	Casuarina glauca	2	Cgl02G2083, Cgl02G2084
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02350, gene.Cymno13g02380
Dunaliellaceae	Dunaliella salina	1	Dusal.0043s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g16150, gene.Thate02g16650, gene.Thate05g28420 ... gene.Thate09g00150
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2290
Plantaginaceae	Plantago ovata	4	Pov_00012522, Pov_00034051, Pov_00035129, Pov_00040821
Plumbaginaceae	Limonium bicolor	3	Lb1G00731, Lb1G07184, Lb1G07188
Poaceae	Echinochloa crus-galli	9	AH01.2457, AH01.4334, AH06.122, BH01.2803, BH01.4640 ... BH06.222, CH01.3007, CH01.4955, CH06.205
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0120730, gene-QOZ80_2BG0175630 ... gene-QOZ80_3AG0241060, gene-QOZ80_3BG0287060, gene-QOZ80_6AG0507590, gene-QOZ80_6BG0459670
Poaceae	Lolium multiflorum	5	gene-QYE76_005086, gene-QYE76_027680, gene-QYE76_035238 ... gene-QYE76_035463, gene-QYE76_063515
Poaceae	Oryza coarctata	6	Oco05G008190, Oco06G008470, Oco11G001710, Oco12G001580 ... Oco19G001300, Oco20G001450
Poaceae	Oryza sativa	3	LOC_Os03g14530.1, LOC_Os06g04290.1, LOC_Os10g08930.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G417600, gene-BS78_10G025800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0401986
Poaceae	Sporobolus alterniflorus	7	Chr01G029530, Chr04G000360, Chr07G000410, Chr11G023650 ... Chr12G009990, Chr14G001260, Chr21G000350
Poaceae	Thinopyrum elongatum	3	Tel5E01G068100, Tel5E01G078000, Tel7E01G149800
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG010400, gene_TRIDC5AG004730 ... gene_TRIDC5BG004280, gene_TRIDC5BG005090
Poaceae	Triticum aestivum	8	TraesCS2A02G485400.1, TraesCS3B02G001700.1 ... TraesCS4A02G417400.1, TraesCS5A02G032000.1, TraesCS5B02G027300.1, TraesCS5D02G035600.1, TraesCS5D02G040400.1, TraesCS7D02G066800.1
Poaceae	Zea mays	3	Zm00001eb010700_P001, Zm00001eb378000_P002 ... Zm00001eb398590_P001
Poaceae	Zoysia japonica	4	nbis-gene-2259, nbis-gene-3881, nbis-gene-40335 ... nbis-gene-53838
Poaceae	Zoysia macrostachya	5	Zma_g1641, Zma_g29056, Zma_g31298, Zma_g31299, Zma_g4023
Portulacaceae	Portulaca oleracea	3	evm.TU.LG05.21, evm.TU.LG11.1540, evm.TU.LG25.1307
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g29860, gene.Posoc03g09470, gene.Posoc10g04990
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1284, evm.TU.Scaffold_2_RagTag.889 ... evm.TU.Scaffold_4_RagTag.247
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12595, nbisL1-mrna-12596, nbisL1-mrna-29105
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18579, nbisL1-mrna-6870
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10001, nbisL1-mrna-12860, nbisL1-mrna-2049
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.155, evm.TU.utg000009l.887 ... evm.TU.utg000010l.320
Rhizophoraceae	Kandelia obovata	3	Maker00000339, Maker00005623, Maker00008938
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-21849, nbisL1-mrna-2431, nbisL1-mrna-547
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-2279, nbisL1-mrna-5846, nbisL1-mrna-6170 ... nbisL1-mrna-8935
Salicaceae	Populus euphratica	7	populus_peu27857, populus_peu29138, populus_peu29159 ... populus_peu30519, populus_peu31789, populus_peu31790, populus_peu32073
Solanaceae	Lycium barbarum	3	gene-LOC132608835, gene-LOC132636382, gene-LOC132645361
Solanaceae	Solanum chilense	2	SOLCI006813900, SOLCI006814000
Solanaceae	Solanum pennellii	2	gene-LOC107003272, gene-LOC107010353
Tamaricaceae	Reaumuria soongarica	2	STRG.30525_chr10_-, STRG.30526_chr10_-
Tamaricaceae	Tamarix chinensis	1	TC05G0266
Zosteraceae	Zostera marina	2	Zosma01g35680.v3.1, Zosma03g23740.v3.1