Basic Information
Locus ID:
Sp5g13800.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 5219924 | 5221703 | + | Sp5g13800.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 48,705.07 Da | 44.06 | 76.60 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 21 | 326 | 7.80767E-171 | - |
| Pfam | PF00850 | Histone deacetylase domain | 39 | 324 | 2.0E-63 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 17 | 378 | 3.55E-94 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 7 | 393 | 3.2E-108 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 2 | 427 | 1.7E-155 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 70 | 88 | 6.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 222 | 235 | 6.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 239 | 257 | 6.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 37 | 54 | 6.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 163 | 179 | 6.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 101 | 118 | 6.2E-40 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 144 | 167 | 7.5E-14 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 261 | 271 | 7.5E-14 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 122 | 142 | 6.2E-40 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 176 | 191 | 7.5E-14 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 427 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35600.1 | histone deacetylase7. | 0 |
| RefSeq | XP_009150219.3 | histone deacetylase 7-like isoform X2 [Brassica rapa] | 0 |
| Q9FH09 | Histone deacetylase 7 OS=Arabidopsis thaliana OX=3702 GN=HDA7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565BTW7 | Histone deacetylase OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS15214 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology