Basic Information
Locus ID:
Sp5g08930.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 3325947 | 3327209 | + | Sp5g08930.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 32,897.74 Da | 37.69 | 67.16 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 241 | 281 | 9.21905E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 240 | 286 | 2.7E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 241 | 287 | 8.7E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 291 | 3.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 242 | 280 | 5.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 242 | 281 | 10.792683 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006403692.1 | probable E3 ubiquitin-protein ligase LUL2 [Eutrema salsugineum] | 0 |
| Q9LFH6 | Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1 | 0 | |
| TrEMBL | V4L495 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010573mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology