Basic Information
Locus ID:
Sp5g08690.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 3236209 | 3241629 | + | Sp5g08690.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 94,839.43 Da | 44.87 | 73.06 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 502 | 542 | 1.0212E-19 | - |
| Pfam | PF16135 | Tify domain binding domain | 226 | 280 | 5.9E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 436 | 485 | 1.5E-16 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 502 | 543 | 1.3E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 485 | 542 | 3.99E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 732 | 824 | 3.09E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 571 | 636 | 2.19E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 578 | 638 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 677 | 844 | 1.0E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 494 | 546 | 4.9E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 579 | 636 | 5.8E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 502 | 543 | 3.0E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 577 | 638 | 8.5377 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 500 | 545 | 9.997299 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 503 | 542 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 580 | 635 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53680.2 | - | 0 |
| RefSeq | XP_024013415.1 | uncharacterized protein LOC18021238 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3JSS8 | Chromodomain-helicase-DNA-binding protein 4 OS=Noccaea caerulescens OX=107243 GN=MP_TR5961_c0_g1_i1_g.16875 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology