Basic Information
Locus ID:
Sp5g08390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 3135419 | 3137020 | + | Sp5g08390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 53,757.70 Da | 38.82 | 73.47 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 166 | 191 | 1.3 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 193 | 239 | 8.2E-10 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 375 | 460 | 1.2E-29 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 100 | 335 | 4.7E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 195 | 228 | 1.2E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 12.58363 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 96 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_006403629.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Eutrema salsugineum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | V4LRJ3 | DYW_deaminase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010282mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology