Basic Information
Locus ID:
Sp5g08350.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 3120488 | 3121409 | + | Sp5g08350.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 19,749.80 Da | 48.19 | 74.07 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 59 | 108 | 7.62905E-11 | - |
| Pfam | PF12906 | RING-variant domain | 59 | 107 | 1.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 111 | 6.71E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 118 | 1.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 58 | 108 | 1.1E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 51 | 114 | 18.82605 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_013633038.1 | PREDICTED: uncharacterized protein LOC106338656 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | M4DEC4 | RING-CH-type domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology