Basic Information
Locus ID:
Sp5g07570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 2815461 | 2818038 | - | Sp5g07570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 64,672.05 Da | 39.30 | 100.03 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 5.61189E-27 | - |
| Pfam | PF04564 | U-box domain | 247 | 317 | 2.1E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 375 | 414 | 3.2E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 494 | 533 | 8.1E-5 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 322 | 1.55E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 347 | 572 | 1.96E-35 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 336 | 479 | 4.0E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 480 | 576 | 1.6E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 320 | 1.7E-28 | IPR013083 |
| SMART | SM00185 | arm_5 | 416 | 452 | 28.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 4.9E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 494 | 534 | 2.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 375 | 415 | 2.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 453 | 493 | 360.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 43.398769 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 386 | 428 | 14.4374 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 464 | 506 | 8.6624 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_006403526.1 | U-box domain-containing protein 14 [Eutrema salsugineum] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PVR4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology