Basic Information
Locus ID:
Sp5g06580.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 2416703 | 2419111 | + | Sp5g06580.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 86,185.96 Da | 42.51 | 83.47 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 489 | 703 | 1.1E-42 | IPR000719 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 201 | 229 | 2.8E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 464 | 778 | 2.29E-71 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 42 | 267 | 2.96E-20 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 21 | 186 | 1.3E-8 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 449 | 568 | 1.1E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 569 | 789 | 9.0E-48 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 187 | 316 | 5.3E-13 | IPR009091 |
| SMART | SM00220 | serkin_6 | 488 | 782 | 2.2E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 488 | 782 | 36.145599 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 494 | 516 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 619 | 631 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 471 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55950.1 | CRINKLY4 related 3. | 0 |
| RefSeq | XP_024012955.1 | LOW QUALITY PROTEIN: putative serine/threonine-protein kinase-like protein CCR3 [Eutrema salsugineum] | 0 |
| Q9LY50 | Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana OX=3702 GN=CCR3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A565BWV0 | Protein kinase domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS16262 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology