Basic Information
Locus ID:
Sp5g06070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 2233402 | 2236478 | + | Sp5g06070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 44,465.85 Da | 44.69 | 83.24 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 284 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 43 | 287 | 4.16E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 312 | 9.6E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 201 | 241 | 0.09 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 67 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 154 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 285 | 0.18 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_006402985.1 | autophagy-related protein 18d [Eutrema salsugineum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | V4LX08 | Autophagy-related protein 18d-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006031mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology