Basic Information
Locus ID:
Sp5g04500.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 1623269 | 1624579 | + | Sp5g04500.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 33,739.17 Da | 33.56 | 88.96 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 8 | 132 | 3.08046E-35 | IPR002083 |
| Pfam | PF00917 | MATH domain | 13 | 131 | 7.3E-10 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 4 | 141 | 1.39E-34 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1 | 139 | 1.9E-34 | IPR008974 |
| SMART | SM00061 | math_3 | 8 | 112 | 7.4E-12 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 6 | 131 | 27.882805 | IPR002083 |
| Coils | Coil | Coil | 242 | 283 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58350.1 | RESTRICTED TEV MOVEMENT 3. Encodes RTM3 (Restricted Tobacco etch potyvirus Movement), a protein belonging to a protein family of 29 members which has a meprin and TRAF homology (MATH) domain in its N-terminal region and a coiled-coil (CC) domain at its C-terminal end. There are at least three RTMs in Arabidopsis. RTM proteins might form a multiprotein complex in the resistance mechanism to block the long distance movement of potyviruses. | 0 |
| RefSeq | NP_567063.1 | RESTRICTED TEV MOVEMENT 3 [Arabidopsis thaliana] | 0 |
| D5K228 | Protein RESTRICTED TEV MOVEMENT 3 OS=Arabidopsis thaliana OX=3702 GN=RTM3 PE=1 SV=1 | 0 | |
| TrEMBL | D5K227 | Restricted tev movement 3 OS=Arabidopsis thaliana OX=3702 GN=RTM3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |