Basic Information
Locus ID:
Sp5g04350.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Plant organelle RNA recognition domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 1566644 | 1568992 | + | Sp5g04350.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 48,773.66 Da | 47.20 | 80.26 | -0.50 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58520.1 | Ubiquitin carboxyl-terminal hydrolase family protein. | 0 |
| RefSeq | XP_006402780.1 | protein WHAT'S THIS FACTOR 1 homolog [Eutrema salsugineum] | 0 |
| Q9ZUZ6 | Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1 | 0 | |
| TrEMBL | V4LWG5 | PORR domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006002mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31276 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4482 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59145, Sbi_jg63488 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23413 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02539, Sgl07694 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013250, gene:ENSEOMG00000030639 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019020, CQ.Regalona.r1.3BG0019600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278300 |
| Apiaceae | Apium graveolens | 2 | Ag10G02981, Ag3G02840 |
| Arecaceae | Cocos nucifera | 1 | scaffold052065G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716987 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G29713 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006002m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1360 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g06270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1848 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006834 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1789, BH09.1970, CH09.2122 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0308540, gene-QOZ80_4BG0339520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0185640.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G012160, Oco08G011880 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G178100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G007360, Chr25G006120, Chr26G012400, Chr30G005930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G674400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG056760, gene_TRIDC2BG059640 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G392800.1.cds1, TraesCS2B02G410900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37244 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20171 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1049, evm.TU.LG21.701 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1108 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4080 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14707 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22201 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.577 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5646 |
| Salicaceae | Populus euphratica | 1 | populus_peu12348 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645516 |
| Solanaceae | Solanum chilense | 1 | SOLCI001227600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026594 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13496_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1351 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05090.v3.1 |