Basic Information
Locus ID:
Sp5g03460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 1229625 | 1231604 | + | Sp5g03460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 74,145.88 Da | 38.02 | 92.25 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 16 | 244 | 7.66831E-72 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 341 | 611 | 8.05289E-90 | - |
| Pfam | PF00139 | Legume lectin domain | 23 | 248 | 5.0E-54 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 335 | 549 | 1.3E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 632 | 2.16E-79 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 11 | 252 | 1.07E-59 | IPR013320 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 622 | 3.7E-58 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 14 | 253 | 1.1E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 320 | 411 | 2.0E-33 | - |
| SMART | SM00220 | serkin_6 | 335 | 590 | 1.5E-39 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 335 | 613 | 39.156139 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 460 | 472 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 341 | 364 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59740.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_048611231.1 | L-type lectin-domain containing receptor kinase V.7-like isoform X1 [Brassica napus] | 0 |
| Q9ZR79 | L-type lectin-domain containing receptor kinase V.7 OS=Arabidopsis thaliana OX=3702 GN=LECRK57 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8AWL3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024304 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G59700.1, AT3G59730.1, AT3G59740.1, AT3G59750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005823m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g03460.v2.2, Sp5g03480.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064220.2N, BniB06g053940.2N, BniB06g062990.2N ... |