Basic Information
Locus ID:
Sp5g03240.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
kelch repeat-containing F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 1144565 | 1145806 | - | Sp5g03240.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 45,849.31 Da | 57.34 | 68.18 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 55 | 1.4E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 194 | 239 | 1.3E-11 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 141 | 191 | 2.2E-4 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 56 | 1.83E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 113 | 396 | 1.06E-34 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 85 | 397 | 2.5E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 63 | 4.1E-7 | - |
| SMART | SM00256 | fbox_2 | 15 | 55 | 6.0E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 206 | 253 | 1.4E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 151 | 204 | 0.13 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006402638.1 | F-box/kelch-repeat protein SKIP20 [Eutrema salsugineum] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | V4NDK7 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006395mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology