Basic Information
Locus ID:
Sp5g03050.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 1072894 | 1079131 | + | Sp5g03050.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 169,808.78 Da | 43.07 | 103.86 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 328 | 616 | 8.8147E-100 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 948 | 1242 | 1.51706E-91 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 642 | 842 | 3.26811E-95 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1265 | 1485 | 1.34125E-123 | - |
| Pfam | PF00005 | ABC transporter | 660 | 794 | 5.4E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 979 | 1194 | 4.0E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 328 | 594 | 3.3E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1284 | 1432 | 2.1E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1258 | 1497 | 1.43E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 858 | 9.92E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 616 | 1.44E-37 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 948 | 1253 | 3.66E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 868 | 2.5E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1250 | 1503 | 2.3E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 299 | 627 | 3.9E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 909 | 1248 | 7.1E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1293 | 1478 | 5.9E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 669 | 842 | 8.6E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1501 | 17.560492 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 950 | 1214 | 32.11845 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 608 | 35.466816 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 642 | 865 | 23.236065 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 767 | 781 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_006402616.1 | putative ABC transporter C family member 15 isoform X1 [Eutrema salsugineum] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | V4LK36 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005742mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology