Basic Information
Locus ID:
Sp5g01650.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 568575 | 570049 | + | Sp5g01650.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 43,051.07 Da | 60.82 | 82.61 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 333 | 376 | 2.58601E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 41 | 100 | 5.2E-16 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 334 | 376 | 2.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 329 | 379 | 8.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 381 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 334 | 375 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 376 | 12.415513 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006402450.1 | RING-H2 finger protein ATL22 isoform X1 [Eutrema salsugineum] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6D2JH76 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25671 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology