Basic Information
Locus ID:
Sp5g00750.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 242089 | 244346 | + | Sp5g00750.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 48,741.53 Da | 48.41 | 78.48 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 335 | 0.0034 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 91 | 350 | 2.29E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 93 | 422 | 9.5E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 295 | 336 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 205 | 400.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_006402343.1 | autophagy-related protein 18a [Eutrema salsugineum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | V4NCS5 | Autophagy-related protein 18a-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005977mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology