Basic Information
Locus ID:
Sp5g00550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 187875 | 189815 | - | Sp5g00550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 30,838.70 Da | 54.07 | 51.62 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 155 | 198 | 3.5417E-14 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 197 | 2.8E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 20 | 100 | 2.7E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 202 | 259 | 1.2E-24 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 90 | 3.14E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 91 | 148 | 6.02E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 204 | 3.03E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 220 | 4.0E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 225 | 267 | 1.6E-19 | - |
| SMART | SM00184 | ring_2 | 155 | 197 | 7.3E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 13 | 88 | 25.481781 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 90 | 154 | 33.182758 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 197 | 11.633604 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_013711109.2 | E3 ubiquitin-protein ligase MIEL1 isoform X2 [Brassica napus] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P5YPL2 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T40891Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology