Basic Information
Locus ID:
Sp5g00540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch5-1 | 184449 | 187068 | + | Sp5g00540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 66,471.40 Da | 46.70 | 93.99 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 8 | 47 | 9.9E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 66 | 112 | 4.7E-26 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 42 | 2.75E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 32 | 534 | 1.26E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 576 | 7.6E-190 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 2.1E-23 | - |
| SMART | SM00367 | LRR_CC_2 | 313 | 336 | 430.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 395 | 0.89 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 288 | 312 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 480 | 504 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 155 | 192 | 520.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 1.4E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 431 | 454 | 220.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_006402320.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Eutrema salsugineum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6D2IS50 | F-box domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS17713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology