Basic Information
Locus ID:
Sp4g29500.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 8165396 | 8166154 | - | Sp4g29500.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 27,946.48 Da | 75.35 | 81.98 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 109 | 152 | 8.06373E-18 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 152 | 1.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 160 | 4.42E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 160 | 2.3E-23 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 106 | 160 | 0.0089 | - |
| SMART | SM00184 | ring_2 | 110 | 151 | 2.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 152 | 13.271187 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 197 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_009142520.1 | RING-H2 finger protein ATL5 [Brassica rapa] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3HU87 | RING-H2 finger protein ATL5 OS=Noccaea caerulescens OX=107243 GN=LE_TR20772_c18_g1_i1_g.67080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology