Basic Information
Locus ID:
Sp4g29290.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 8084411 | 8087969 | + | Sp4g29290.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 54,390.77 Da | 55.37 | 52.73 | -1.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 445 | 476 | 9.8E-8 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 345 | 427 | 9.7E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 345 | 430 | 1.4E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| Coils | Coil | Coil | 334 | 371 | - | - |
| Coils | Coil | Coil | 387 | 407 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006397928.1 | stress response protein nst1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4N2G0 | PAPA-1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001400mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology