Basic Information
Locus ID:
Sp4g28090.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBC6
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 7635620 | 7636920 | - | Sp4g28090.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.14 | 21,298.36 Da | 47.80 | 63.44 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 7.60405E-51 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 142 | 1.5E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 148 | 3.81E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 4 | 157 | 2.2E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 2.5E-51 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 41.225235 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46030.1 | ubiquitin-conjugating enzyme 6. Ubiquitin conjugating enzyme E2 | 0 |
| RefSeq | XP_009142401.1 | ubiquitin-conjugating enzyme E2 6 [Brassica rapa] | 0 |
| P42750 | Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2 | 0 | |
| TrEMBL | A0A397ZY25 | UBC core domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA04T18884Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology