Basic Information
Locus ID:
Sp4g27980.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 7596125 | 7601035 | + | Sp4g27980.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 94,068.32 Da | 51.90 | 82.64 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 46 | 199 | 2.35281E-51 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 771 | 812 | 1.83782E-25 | - |
| Pfam | PF00069 | Protein kinase domain | 489 | 735 | 3.1E-38 | IPR000719 |
| Pfam | PF04564 | U-box domain | 767 | 837 | 7.9E-19 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 46 | 163 | 5.94E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 767 | 837 | 2.12E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 465 | 743 | 5.13E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 464 | 557 | 1.3E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 558 | 758 | 1.1E-44 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 40 | 167 | 4.1E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 837 | 5.8E-29 | IPR013083 |
| SMART | SM00220 | serkin_6 | 485 | 747 | 1.3E-26 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 770 | 833 | 6.0E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 766 | 838 | 38.268265 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 485 | 748 | 31.990202 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 491 | 512 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 603 | 615 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 283 | - | - |
| Coils | Coil | Coil | 389 | 458 | - | - |
| Coils | Coil | Coil | 340 | 360 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_020883943.1 | U-box domain-containing protein 33 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A565B9K2 | RING-type E3 ubiquitin transferase OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS8728 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology