Basic Information
Locus ID:
Sp4g24610.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 6390652 | 6393783 | - | Sp4g24610.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 73,244.05 Da | 37.36 | 82.92 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 380 | 497 | 1.03458E-21 | IPR002083 |
| CDD | cd00121 | MATH | 6 | 131 | 2.39663E-29 | IPR002083 |
| Pfam | PF00917 | MATH domain | 382 | 498 | 3.4E-12 | IPR002083 |
| Pfam | PF00917 | MATH domain | 14 | 131 | 2.2E-12 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 378 | 498 | 1.8E-22 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 132 | 1.14E-29 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1 | 138 | 3.4E-34 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 378 | 516 | 9.4E-26 | IPR008974 |
| SMART | SM00061 | math_3 | 7 | 114 | 2.9E-11 | IPR002083 |
| SMART | SM00061 | math_3 | 378 | 479 | 1.2E-7 | IPR002083 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | 5.0 | - |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 373 | 496 | 23.53599 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 5 | 131 | 27.090151 | IPR002083 |
| Coils | Coil | Coil | 293 | 313 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42480.1 | TRAF-like family protein. | 0 |
| RefSeq | XP_013635945.1 | PREDICTED: MATH domain and coiled-coil domain-containing protein At2g42465-like [Brassica oleracea var. oleracea] | 0 |
| P0DKG7 | MATH domain and coiled-coil domain-containing protein At2g42480 OS=Arabidopsis thaliana OX=3702 GN=At2g42480 PE=4 SV=1 | 0 | |
| TrEMBL | V4MCP0 | MATH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017566mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |