Basic Information
Locus ID:
Sp4g23370.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 5907530 | 5908690 | + | Sp4g23370.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 41,467.18 Da | 49.66 | 93.63 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 40 | 7.4E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 194 | 313 | 1.2E-28 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 61 | 2.88E-12 | IPR036047 |
| SUPERFAMILY | SSF50993 | Peptidase/esterase 'gauge' domain | 33 | 235 | 1.33E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 54 | 7.7E-6 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 4.9E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 127 | 321 | 2.8E-30 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 10.610234 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048612696.1 | F-box/LRR-repeat protein At2g40920-like [Brassica napus] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A078GCH1 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA08g05920D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |