Basic Information
Locus ID:
Sp4g23240.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 5861896 | 5867391 | - | Sp4g23240.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 104,065.09 Da | 51.39 | 85.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 767 | 914 | 3.89089E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 317 | 913 | 1.0E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 38 | 144 | 9.4E-25 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 315 | 915 | 1.31E-108 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 144 | 1.23E-27 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 158 | 247 | 8.2E-16 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 157 | 2.5E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 649 | 922 | 1.7E-56 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 303 | 553 | 3.7E-66 | - |
| SMART | SM00695 | dusp | 34 | 147 | 1.0E-45 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 15 | 145 | 18.760386 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 317 | 916 | 55.839207 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 858 | 875 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 318 | 333 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 685 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_024003784.1 | ubiquitin carboxyl-terminal hydrolase 5 [Eutrema salsugineum] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2ACB1 | Ubiquitin carboxyl-terminal hydrolase OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa04g026320 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology