Basic Information
Locus ID:
Sp4g23130.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 5821955 | 5823912 | + | Sp4g23130.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 45,389.77 Da | 47.05 | 80.98 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 287 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 290 | 2.75E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 32 | 318 | 2.0E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 288 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 70 | 98.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40810.1 | homolog of yeast autophagy 18C. | 0 |
| RefSeq | XP_019102573.1 | PREDICTED: autophagy-related protein 18c-like isoform X2 [Camelina sativa] | 0 |
| Q8GYD7 | Autophagy-related protein 18c OS=Arabidopsis thaliana OX=3702 GN=ATG18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2IV44 | Autophagy-related protein 18c OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS16050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology