Basic Information
Locus ID:
Sp4g21980.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 5349825 | 5351042 | - | Sp4g21980.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 43,480.85 Da | 75.04 | 62.64 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 203 | 244 | 1.21623E-21 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 280 | 390 | 2.7E-33 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 202 | 244 | 6.6E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 5 | 32 | 1.0E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 249 | 3.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 250 | 1.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 243 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 244 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_006294361.1 | probable E3 ubiquitin-protein ligase RHC2A [Capsella rubella] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2IM84 | RING-type E3 ubiquitin transferase OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS16241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology