Basic Information
Locus ID:
Sp4g20260.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 4618539 | 4619607 | - | Sp4g20260.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 23,152.31 Da | 60.60 | 60.52 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 84 | 133 | 1.00314E-12 | - |
| Pfam | PF12906 | RING-variant domain | 84 | 132 | 1.6E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 135 | 5.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 141 | 1.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 83 | 133 | 2.5E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 76 | 139 | 18.270115 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006410994.1 | uncharacterized protein LOC18026939 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MBC4 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017238mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology