Basic Information
Locus ID:
Sp4g19840.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 4464696 | 4469466 | - | Sp4g19840.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 93,947.29 Da | 49.40 | 77.68 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 496 | 536 | 3.2552E-20 | - |
| CDD | cd04301 | NAT_SF | 734 | 795 | 0.00941739 | - |
| Pfam | PF16135 | Tify domain binding domain | 228 | 283 | 1.3E-12 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 496 | 537 | 1.6E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 430 | 479 | 1.4E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 479 | 536 | 2.47E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 574 | 633 | 4.53E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 730 | 820 | 2.47E-9 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 488 | 561 | 1.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 574 | 634 | 1.7E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 674 | 841 | 6.1E-8 | - |
| SMART | SM00249 | PHD_3 | 575 | 632 | 2.7E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 496 | 537 | 2.6E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 573 | 634 | 8.519899 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 494 | 539 | 9.9617 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 497 | 536 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 576 | 631 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 84 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006410939.1 | uncharacterized protein LOC18026862 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MB71 | Chromodomain-helicase-DNA-binding protein 4 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016239mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology