Basic Information
Locus ID:
Sp4g19150.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 4171865 | 4173381 | - | Sp4g19150.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 49,534.00 Da | 45.55 | 94.94 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 17 | 50 | 5.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 51 | 7.19E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 188 | 384 | 3.14E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 53 | 6.9E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 395 | 3.0E-6 | IPR032675 |
| SMART | SM00256 | fbox_2 | 20 | 60 | 0.0018 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 61 | 10.901672 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25860.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | NP_197958.1 | F-box/RNI-like superfamily protein [Arabidopsis thaliana] | 0 |
| Q3E7J7 | Putative F-box/LRR-repeat protein At5g25860 OS=Arabidopsis thaliana OX=3702 GN=At5g25860 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T1YZF0 | F-box domain OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa06g025600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10001423m.g.v1.0, Thhalv10025492m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041250.2N |