Basic Information
Locus ID:
Sp4g19000.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 4084690 | 4091302 | - | Sp4g19000.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 114,299.18 Da | 43.32 | 80.52 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 638 | 678 | 3.91127E-18 | - |
| Pfam | PF00628 | PHD-finger | 639 | 680 | 2.5E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 575 | 622 | 2.9E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 315 | 369 | 3.5E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 624 | 682 | 4.32E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 734 | 782 | 5.55E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 625 | 711 | 1.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 725 | 785 | 5.0E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 638 | 679 | 4.9E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 726 | 783 | 0.0046 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 636 | 681 | 10.469 | IPR019787 |
| ProSiteProfiles | PS51379 | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 384 | 414 | 7.063103 | IPR017896 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 394 | 405 | - | IPR017900 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 639 | 678 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006410846.1 | uncharacterized protein LOC18027534 isoform X1 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M7L2 | PHD-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016173mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology