Basic Information
Locus ID:
Sp4g18730.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3979451 | 3980834 | + | Sp4g18730.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 48,892.95 Da | 46.22 | 71.53 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 121 | 186 | 1.4E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 122 | 2.72E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 204 | 258 | 1.56E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 193 | 2.12E-8 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 182 | 420 | 1.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 124 | 2.8E-6 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 115 | 186 | 1.7E-12 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 195 | 256 | 0.1 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 36 | 260 | 26.420019 | IPR044066 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_018436142.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI16 [Raphanus sativus] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BD01 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |