Basic Information
Locus ID:
Sp4g18180.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3747605 | 3748843 | - | Sp4g18180.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 45,999.24 Da | 47.88 | 107.43 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 2.24853E-23 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 7.7E-23 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 79 | 4.59E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 389 | 7.68E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 395 | 1.8E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 4.2E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 3.7E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 42.408051 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_033146301.1 | E3 ubiquitin-protein ligase PUB23 [Brassica rapa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A078HRF5 | RING-type E3 ubiquitin transferase OS=Brassica napus OX=3708 GN=BnaA04g20950D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology