Basic Information
Locus ID:
Sp4g18140.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
CPK25
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3727284 | 3730094 | - | Sp4g18140.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 60,133.52 Da | 38.98 | 80.58 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 144 | 401 | 2.98122E-136 | - |
| CDD | cd00051 | EFh | 450 | 511 | 1.73294E-6 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 144 | 402 | 8.6E-74 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 134 | 427 | 2.16E-81 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 432 | 525 | 6.35E-15 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 146 | 229 | 1.4E-26 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 410 | 529 | 6.6E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 230 | 409 | 3.2E-60 | - |
| SMART | SM00220 | serkin_6 | 144 | 402 | 1.1E-96 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 144 | 402 | 47.820282 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 445 | 480 | 12.560727 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 150 | 173 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 264 | 276 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 106 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35890.1 | calcium-dependent protein kinase 25. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_024016693.1 | calcium-dependent protein kinase 25 [Eutrema salsugineum] | 0 |
| Q9SJ61 | Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CPK25 PE=2 SV=1 | 0 | |
| TrEMBL | V4MAQ6 | Calcium-dependent protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017592mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017592m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18140.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g008540.2N |